Modules¶
plots.py¶
Functions to make IRF and other reconstruction quality-check plots
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ctaplot.plots.
plot_resolution
(bins, res, log=False, ax=None, **kwargs)¶ Plot the passed resolution.
Parameters: - bins (1D numpy.ndarray) –
- res (2D numpy.ndarray - output from ctpalot.ana.resolution) – res[:,0]: resolution res[:,1]: lower confidence limit res[:,2]: upper confidence limit
- log (bool) – if true, x is logscaled
- ax (matplotlib.pyplot.axes) –
- kwargs (kwargs for matplotlib.pyplot.errorbar) –
Returns: ax
Return type: matplotlib.pyplot.axes
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ctaplot.plots.
plot_resolution_difference
(bins, reference_resolution, new_resolution, ax=None, **kwargs)¶ Plot the algebric difference between a new resolution and reference resolution.
Parameters: - bins (numpy.ndarray) –
- reference_resolution (numpy.ndarray) – output from ctaplot.ana.resolution
- new_resolution (numpy.ndarray) – output from ctaplot.ana.resolution
- ax (matplotlib.pyplot.axis) –
- kwargs (args for ctaplot.plots.plot_resolution) –
Returns: ax
Return type: matplotlib.pyplot.axis
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ctaplot.plots.
plot_energy_resolution
(simu_energy, reco_energy, percentile=68.27, confidence_level=0.95, bias_correction=False, ax=None, **kwargs)¶ Plot the enregy resolution as a function of the energy
Parameters: - simu_energy (numpy.ndarray) –
- reco_energy (numpy.ndarray) –
- ax (matplotlib.pyplot.axes) –
- bias_correction (bool) –
- kwargs (args for matplotlib.pyplot.plot) –
Returns: ax
Return type: matplotlib.pyplot.axes
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ctaplot.plots.
plot_binned_bias
(simu, reco, x, relative_scaling_method=None, ax=None, bins=10, log=False, **kwargs)¶ Plot the bias between simu and reco as a function of bins of x
Parameters: - simu (numpy.ndarray) –
- reco (numpy.ndarray) –
- x (numpy.ndarray) –
- relative_scaling_method (str) – see ctaplot.ana.relative_scaling
- ax (matplotlib.pyplot.axis) –
- bins (bins for numpy.histogram) –
- log (bool) – if True, logscale is applied to the x axis
- kwargs (args for matplotlib.pyplot.errorbar) –
Returns: ax
Return type: matplotlib.pyplot.axis
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ctaplot.plots.
plot_energy_bias
(simu_energy, reco_energy, ax=None, **kwargs)¶ Plot the energy bias
Parameters: - simu_energy (numpy.ndarray) –
- reco_energy (numpy.ndarray) –
- ax (matplotlib.pyplot.axes) –
- kwargs (args for matplotlib.pyplot.plot) –
Returns: ax
Return type: matplotlib.pyplot.axes
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ctaplot.plots.
plot_impact_parameter_error_per_bin
(x, reco_x, reco_y, simu_x, simu_y, bins=10, ax=None, **kwargs)¶ Plot the impact parameter error per bin
Parameters: - x (numpy.ndarray) –
- reco_x (numpy.ndarray) –
- reco_y (numpy.ndarray) –
- simu_x (numpy.ndarray) –
- simu_y (numpy.ndarray) –
- bins (arg for np.histogram) –
- ax (matplotlib.pyplot.axes) –
- kwargs (args for plot_resolution) –
Returns: ax
Return type: matplotlib.pyplot.axes
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ctaplot.plots.
plot_layout_map
(tel_x, tel_y, tel_type=None, ax=None, **kwargs)¶ Plot the layout map of telescopes positions
Parameters: - tel_x (numpy.ndarray) –
- tel_y (numpy.ndarray) –
- TelId (numpy.ndarray) –
- tel_type (numpy.ndarray) –
- LayoutId (numpy.ndarray) –
- Outfile (string) –
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ctaplot.plots.
plot_multiplicity_per_telescope_type
(multiplicity, telescope_type, ax=None, outfile=None, quartils=False, **kwargs)¶ Plot the multiplicity for each telescope type
Parameters: - multiplicity (numpy.ndarray) –
- telescope_type (numpy.ndarray) – same shape as multiplicity
- ax (matplotlib.pyplot.axes) –
- outfile (path) –
- quartils (bool - True to plot 50% and 90% quartil mark) –
- kwargs (args for matplotlib.pyplot.hist) –
Returns: ax
Return type: matplotlib.pyplot.axes
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ctaplot.plots.
plot_multiplicity_hist
(multiplicity, ax=None, outfile=None, quartils=False, **kwargs)¶ Histogram of the telescopes multiplicity
Parameters: - multiplicity (numpy.ndarray) –
- ax (matplotlib.pyplot.axes) –
- outfile (string) –
- **kwargs (args for matplotlib.pyplot.bar) –
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ctaplot.plots.
plot_angles_distribution
(reco_alt, reco_az, source_alt, source_az, outfile=None)¶ Plot the distribution of reconstructed angles in two axes. Save figure to outfile in png format.
Parameters: - reco_alt (numpy.ndarray) –
- reco_az (numpy.ndarray) –
- source_alt (float) –
- source_az (float) –
- outfile (string) –
Returns: Return type: matplotlib.pyplot.figure
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ctaplot.plots.
plot_angles_map_distri
(reco_alt, reco_az, source_alt, source_az, energies, outfile=None)¶ Plot the angles map distribution
Parameters: - reco_alt (numpy.ndarray) –
- reco_az (numpy.ndarray) –
- source_alt (float) –
- source_az (float) –
- energies (numpy.ndarray) –
- outfile (str) –
Returns: fig
Return type: matplotlib.pyplot.figure
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ctaplot.plots.
plot_angular_resolution_cta_performance
(cta_site, ax=None, **kwargs)¶ Plot the official CTA performances (June 2018) for the angular resolution
Parameters: - cta_site (string, see ana.cta_performance) –
- ax (matplotlib.pyplot.axes) –
- kwargs (args for matplotlib.pyplot.plot) –
Returns: ax
Return type: matplotlib.pyplot.axes
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ctaplot.plots.
plot_angular_resolution_cta_requirement
(cta_site, ax=None, **kwargs)¶ Plot the CTA requirement for the angular resolution :param cta_site: see ctaplot.ana.cta_requirement :type cta_site: string :param ax: :type ax: matplotlib.pyplot.axes :param kwargs: :type kwargs: args for matplotlib.pyplot.plot
Returns: ax Return type: matplotlib.pyplot.axes
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ctaplot.plots.
plot_angular_resolution_per_energy
(reco_alt, reco_az, mc_alt, mc_az, energy, percentile=68.27, confidence_level=0.95, bias_correction=False, ax=None, **kwargs)¶ Plot the angular resolution as a function of the energy
Parameters: - reco_alt (numpy.ndarray) –
- reco_az (numpy.ndarray) –
- mc_alt (numpy.ndarray) –
- mc_az (numpy.ndarray) –
- energy (numpy.ndarray) – energies in TeV
- ax (matplotlib.pyplot.axes) –
- kwargs (args for matplotlib.pyplot.errorbar) –
Returns: ax
Return type: matplotlib.pyplot.axes
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ctaplot.plots.
plot_angular_resolution_per_off_pointing_angle
(simu_alt, simu_az, reco_alt, reco_az, alt_pointing, az_pointing, res_degree=False, bins=10, ax=None, **kwargs)¶ Plot the angular resolution as a function of the angular separation between events true position and the pointing direction. Angles must be given in radians.
Parameters: - simu_alt (numpy.ndarray) –
- simu_az (numpy.ndarray) –
- reco_alt (numpy.ndarray) –
- reco_az (numpy.ndarray) –
- alt_pointing (numpy.ndarray) –
- az_pointing (numpy.ndarray) –
- res_degree (bool) – if True, the angular resolution is computed in degrees.
- bins (int or numpy.ndarray) –
- ax (matplotlib.pyplot.axes) –
- kwargs (kwargs for matplotlib.pyplot.errorbar) –
Returns: ax
Return type: matplotlib.pyplot.axes
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ctaplot.plots.
plot_bias_per_energy
(simu, reco, energy, relative_scaling_method=None, ax=None, **kwargs)¶ Plot the bias per bins of energy
Parameters: - simu (numpy.ndarray) –
- reco (numpy.ndarray) –
- energy (numpy.ndarray) –
- relative_scaling_method (str) – see ctaplot.ana.relative_scaling
- ax (matplotlib.pyplot.axis) –
- kwargs (args for matplotlib.pyplot.errorbar) –
Returns: ax
Return type: matplotlib.pyplot.axis
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ctaplot.plots.
plot_binned_stat
(x, y, statistic='mean', bins=20, errorbar=False, percentile=68.27, ax=None, **kwargs)¶ Plot statistics on the quantity y binned following the quantity x. The statistic can be given by a string (’mean’, ’sum’, ’max’…) or a function. See scipy.stats.binned_statistic. Errorbars may be added and represents the dispersion (given by the percentile option) of the y distribution around the measured value in a bin. These error bars might not make sense for some statistics, it is left to the user to use the function responsibly.
Parameters: - x (numpy.ndarray) –
- y (numpy.ndarray) –
- ax (matplotlib.pyplot.axes) –
- errorbar (bool) –
- statistic (string or callable - see scipy.stats.binned_statistic) –
- bins (bins for scipy.stats.binned_statistic) –
- kwargs (if errorbar: kwargs for matplotlib.pyplot.hlines else: kwargs for matplotlib.pyplot.plot) –
Returns: Return type: matplotlib.pyplot.axes
Examples
>>> from ctaplot.plots import plot_binned_stat >>> import numpy as np >>> x = np.random.rand(1000) >>> y = x**2 >>> plot_binned_stat(x, y, statistic='median', bins=40, percentile=95, marker='o', linestyle='')
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ctaplot.plots.
plot_dispersion
(simu_x, reco_x, x_log=False, ax=None, **kwargs)¶ Plot the dispersion around an expected value X_true
Parameters: - simu_x (numpy.ndarray) –
- reco_x (numpy.ndarray) –
- ax (matplotlib.pyplot.axes) –
- kwargs (args for matplotlib.pyplot.hist2d) –
Returns: Return type: maptlotlib.pyplot.axes
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ctaplot.plots.
plot_effective_area_cta_performance
(cta_site, ax=None, **kwargs)¶ Plot the CTA performances for the effective area
Parameters: - cta_site (string) – see ctaplot.ana.cta_requirement
- ax (matplotlib.pyplot.axes) –
Returns: ax
Return type: matplotlib.pyplot.axes
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ctaplot.plots.
plot_effective_area_cta_requirement
(cta_site, ax=None, **kwargs)¶ Plot the CTA requirement for the effective area
Parameters: - cta_site (string) – see ctaplot.ana.cta_requirement
- ax (matplotlib.pyplot.axes) –
Returns: ax
Return type: matplotlib.pyplot.axes
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ctaplot.plots.
plot_effective_area_per_energy
(simu_energy, reco_energy, simulated_area, ax=None, **kwargs)¶ Plot the effective area as a function of the energy
Parameters: - simu_energy (numpy.ndarray - all simulated event energies) –
- reco_energy (numpy.ndarray - all reconstructed event energies) –
- simulated_area (float) –
- ax (matplotlib.pyplot.axes) –
- kwargs (options for maplotlib.pyplot.errorbar) –
Returns: ax
Return type: matplotlib.pyplot.axes
Example
>>> import numpy as np >>> import ctaplot >>> irf = ctaplot.ana.irf_cta() >>> simu_e = 10**(-2 + 4*np.random.rand(1000)) >>> reco_e = 10**(-2 + 4*np.random.rand(100)) >>> ax = ctaplot.plots.plot_effective_area_per_energy(simu_e, reco_e, irf.LaPalmaArea_prod3)
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ctaplot.plots.
plot_effective_area_per_energy_power_law
(emin, emax, total_number_events, spectral_index, reco_energy, simu_area, ax=None, **kwargs)¶ Plot the effective area as a function of the energy. The effective area is computed using the ctaplot.ana.effective_area_per_energy_power_law.
Parameters: - emin (float) – min simulated energy
- emax (float) – max simulated energy
- total_number_events (int) – total number of simulated events
- spectral_index (float) – spectral index of the simulated power-law
- reco_energy (numpy.ndarray) – reconstructed energies
- simu_area (float) – simulated core area
- ax (matplotlib.pyplot.axes) –
- kwargs (args for matplotlib.pyplot.errorbar) –
Returns: ax
Return type: matplotlib.pyplot.axes
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ctaplot.plots.
plot_energy_distribution
(mc_energy, reco_energy, ax=None, outfile=None, mask_mc_detected=True)¶ Plot the energy distribution of the simulated particles, detected particles and reconstructed particles The plot might be saved automatically if outfile is provided.
Parameters: - mc_energy (Numpy 1d array of simulated energies) –
- reco_energy (Numpy 1d array of reconstructed energies) –
- ax (matplotlib.pyplot.axes) –
- outfile (string - output file path) –
- mask_mc_detected (Numpy 1d array - mask of detected particles for the SimuE array) –
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ctaplot.plots.
plot_energy_resolution_cta_performance
(cta_site, ax=None, **kwargs)¶ Plot the cta performances (June 2018) for the energy resolution
Parameters: - cta_site (string) – see ctaplot.ana.cta_performance
- ax (matplotlib.pyplot.axes) –
- kwargs (args for matplotlib.pyplot.plot) –
Returns: ax
Return type: matplotlib.pyplot.axes
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ctaplot.plots.
plot_energy_resolution_cta_requirement
(cta_site, ax=None, **kwargs)¶ Plot the cta requirement for the energy resolution
Parameters: - cta_site (string) – see ana.cta_requirement
- ax (matplotlib.pyplot.axes) –
- kwargs (args for matplotlib.pyplot.plot) –
Returns: ax
Return type: matplotlib.pyplot.axes
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ctaplot.plots.
plot_feature_importance
(feature_keys, feature_importances, ax=None)¶ Plot features importance after model training (typically from scikit-learn)
Parameters: - feature_keys (list of string) –
- feature_importances (numpy.ndarray) –
- ax (matplotlib.pyplot.axes) –
Returns: Return type: ax
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ctaplot.plots.
plot_field_of_view_map
(reco_alt, reco_az, source_alt, source_az, energies=None, ax=None, outfile=None)¶ Plot a map in angles [in degrees] of the photons seen by the telescope (after reconstruction)
Parameters: - reco_alt (numpy.ndarray) –
- reco_az (numpy.ndarray) –
- source_alt (float, source Altitude) –
- source_az (float, source Azimuth) –
- energies (numpy.ndarray - if given, set the colorbar) –
- ax (matplotlib.pyplot.axes) –
- outfile (string - if None, the plot is not saved) –
Returns: ax
Return type: matplitlib.pyplot.axes
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ctaplot.plots.
plot_impact_map
(impact_x, impact_y, tel_x, tel_y, tel_types=None, ax=None, Outfile='ImpactMap.png', hist_kwargs={}, scatter_kwargs={})¶ Map of the site with telescopes positions and impact points heatmap
Parameters: - impact_x (numpy.ndarray) –
- impact_y (numpy.ndarray) –
- tel_x (numpy.ndarray) –
- tel_y (numpy.ndarray) –
- tel_types (numpy.ndarray) –
- ax (matplotlib.pyplot.axes) –
- hist_kwargs (kwargs for matplotlib.pyplot.hist) –
- scatter_kwargs (kwargs for matplotlib.pyplot.scatter) –
- Outfile (string - name of the output file) –
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ctaplot.plots.
plot_impact_parameter_error_per_energy
(reco_x, reco_y, simu_x, simu_y, energy, ax=None, **kwargs)¶ Deprecated since version 18/08/2019: plot_impact_parameter_error_per_energy will be removed in a future release.Use plot_impact_parameter_resolution_per_energy instead
plot the impact parameter error distance as a function of energy and save the plot as Outfile :param reco_x: :type reco_x: numpy.ndarray :param reco_y: :type reco_y: numpy.ndarray :param simu_x: :type simu_x: numpy.ndarray :param simu_y: :type simu_y: numpy.ndarray :param energy: :type energy: numpy.ndarray :param ax: :type ax: matplotlib.pyplot.axes :param kwargs: :type kwargs: args for matplotlib.pyplot.errorbar
Returns: energy, err_mean Return type: numpy arrays
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ctaplot.plots.
plot_impact_parameter_error_per_multiplicity
(reco_x, reco_y, simu_x, simu_y, multiplicity, max_mult=None, ax=None, **kwargs)¶ Plot the impact parameter error as a function of multiplicity TODO: refactor and clean code
Parameters: - reco_x (numpy.ndarray) –
- reco_y (numpy.ndarray) –
- simu_x (numpy.ndarray) –
- simu_y (numpy.ndarray) –
- multiplicity (numpy.ndarray) –
- max_mult (optional, max multiplicity - float) –
- ax (matplotlib.pyplot.axes) –
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ctaplot.plots.
plot_impact_parameter_error_site_center
(reco_x, reco_y, simu_x, simu_y, ax=None, **kwargs)¶ Plot the impact parameter error as a function of the distance to the site center.
Parameters: - reco_x (numpy.ndarray) –
- reco_y (numpy.ndarray) –
- simu_x (numpy.ndarray) –
- simu_y (numpy.ndarray) –
- ax (matplotlib.pyplot.axes) –
- kwargs (kwargs for matplotlib.pyplot.hist2d) –
Returns: Return type: ax
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ctaplot.plots.
plot_impact_parameter_resolution_per_energy
(reco_x, reco_y, simu_x, simu_y, energy, ax=None, **kwargs)¶ Parameters: - reco_x –
- reco_y –
- simu_x –
- simu_y –
- energy –
- ax –
- kwargs –
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ctaplot.plots.
plot_impact_point_heatmap
(reco_x, reco_y, ax=None, outfile=None)¶ Plot the heatmap of the impact points on the site ground and save it under Outfile
Parameters: - reco_x (numpy.ndarray) –
- reco_y (numpy.ndarray) –
- ax (matplotlib.pyplot.axes) –
- outfile (string) –
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ctaplot.plots.
plot_impact_point_map_distri
(reco_x, reco_y, tel_x, tel_y, fit=False, outfile=None, **kwargs)¶ Map and distributions of the reconstructed impact points.
Parameters: - reco_x (numpy.ndarray) –
- reco_y (numpy.ndarray) –
- tel_x (numpy.ndarray) – X positions of the telescopes
- tel_y (numpy.ndarray) – Y positions of the telescopes
- kde (bool - if True, makes a gaussian fit of the point density) –
- outfile ('str' - save a png image of the plot under 'string.png') –
Returns: fig
Return type: matplotlib.pyplot.figure
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ctaplot.plots.
plot_impact_resolution_per_energy
(reco_x, reco_y, simu_x, simu_y, simu_energy, percentile=68.27, confidence_level=0.95, bias_correction=False, ax=None, **kwargs)¶ Plot the angular resolution as a function of the energy
Parameters: - reco_x (numpy.ndarray) –
- reco_y (numpy.ndarray) –
- simu_x (float) –
- simu_y (float) –
- simu_energy (numpy.ndarray) –
- ax (matplotlib.pyplot.axes) –
- kwargs (args for matplotlib.pyplot.errorbar) –
Returns: ax
Return type: matplotlib.pyplot.axes
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ctaplot.plots.
plot_migration_matrix
(x, y, ax=None, colorbar=False, xy_line=False, hist2d_args={}, line_args={})¶ Make a simple plot of a migration matrix
Parameters: - x (list or numpy.ndarray) –
- y (list or numpy.ndarray) –
- ax (matplotlib.pyplot.axes) –
- colorbar (matplotlib.colorbar) –
- hist2d_args (dict, args for matplotlib.pyplot.hist2d) –
- line_args (dict, args for matplotlib.pyplot.plot) –
Returns: Return type: matplotlib.pyplot.axes
Examples
>>> from ctaplot.plots import plot_migration_matrix >>> import matplotlib >>> x = np.random.rand(10000) >>> y = x**2 >>> plot_migration_matrix(x, y, colorbar=True, hist2d_args=dict(norm=matplotlib.colors.LogNorm())) In this example, the colorbar will be log normed
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ctaplot.plots.
plot_multiplicity_per_energy
(multiplicity, energies, ax=None, outfile=None)¶ Plot the telescope multiplicity as a function of the energy The plot might be saved automatically if outfile is provided.
Parameters: - multiplicity (numpy.ndarray) –
- energies (numpy.ndarray) –
- ax (matplotlib.pyplot.axes) –
- outfile (string) –
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ctaplot.plots.
plot_resolution_per_energy
(reco, simu, energy, ax=None, **kwargs)¶ Plot a variable resolution as a function of the energy
Parameters: - reco (numpy.ndarray) –
- simu (numpy.ndarray) –
- energy (numpy.ndarray) –
- ax (matplotlib.pyplot.axes) –
- kwargs (args for matplotlib.pyplot.errorbar) –
Returns: ax
Return type: matplotlib.pyplot.axes
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ctaplot.plots.
plot_sensitivity_cta_performance
(cta_site, ax=None, **kwargs)¶ Plot the CTA performances for the sensitivity
Parameters: - cta_site (string - see ctaplot.ana.cta_requirement) –
- ax (matplotlib.pyplot.axes, optional) –
Returns: ax
Return type: matplotlib.pyplot.axes
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ctaplot.plots.
plot_sensitivity_cta_requirement
(cta_site, ax=None, **kwargs)¶ Plot the CTA requirement for the sensitivity :param cta_site: :type cta_site: string - see ctaplot.ana.cta_requirement :param ax: :type ax: matplotlib.pyplot.axes, optional
Returns: ax Return type: matplotlib.pyplot.axes
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ctaplot.plots.
plot_theta2
(reco_alt, reco_az, mc_alt, mc_az, ax=None, **kwargs)¶ Plot the theta2 distribution and display the corresponding angular resolution in degrees. The input must be given in radians.
Parameters: - reco_alt (numpy.ndarray - reconstructed altitude angle in radians) –
- reco_az (numpy.ndarray - reconstructed azimuth angle in radians) –
- mc_alt (numpy.ndarray - true altitude angle in radians) –
- mc_az (numpy.ndarray - true azimuth angle in radians) –
- ax (matplotlib.pyplot.axes) –
- **kwargs (options for matplotlib.pyplot.hist) –
Returns: ax
Return type: matplotlib.pyplot.axes
ana.py¶
Contain mathematical functions to make results analysis (compute angular resolution, effective surface, energy resolution… )
-
class
ctaplot.ana.
irf_cta
¶ Bases:
object
Class to handle Instrument Response Function data
-
set_E_bin
(E_bin)¶
-
-
class
ctaplot.ana.
cta_performance
(site)¶ Bases:
object
-
get_angular_resolution
()¶
-
get_effective_area
(observation_time=50)¶ Return the effective area at the given observation time in hours. NB: Only 50h supported Returns the energy array and the effective area array :param observation_time: :type observation_time: optional
Returns: Return type: numpy.ndarray, numpy.ndarray
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get_energy_resolution
()¶
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get_sensitivity
(observation_time=50)¶
-
-
class
ctaplot.ana.
cta_requirement
(site)¶ Bases:
object
-
get_angular_resolution
()¶
-
get_effective_area
(observation_time=50)¶ Return the effective area at the given observation time in hours. NB: Only 0.5h supported Returns the energy array and the effective area array :param observation_time: :type observation_time: optional
Returns: Return type: numpy.ndarray, numpy.ndarray
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get_energy_resolution
()¶
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get_sensitivity
(observation_time=50)¶
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-
ctaplot.ana.
stat_per_energy
(energy, y, statistic='mean')¶ Return statistic for the given quantity per energy bins. The binning is given by irf_cta
Parameters: - energy (numpy.ndarray (1d)) – event energies
- y (numpy.ndarray (1d)) –
- statistic (string) – see scipy.stat.binned_statistic
Returns: bin_stat, bin_edges, binnumber
Return type: numpy.ndarray, numpy.ndarray, numpy.ndarray
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ctaplot.ana.
bias
(simu, reco)¶ Compute the bias of a reconstructed variable as median(reco-simu)
Parameters: - simu (numpy.ndarray) –
- reco (numpy.ndarray) –
Returns: Return type: float
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ctaplot.ana.
relative_bias
(simu, reco, relative_scaling_method='s1')¶ Compute the relative bias of a reconstructed variable as median(reco-simu)/relative_scaling(simu, reco)
Parameters: - simu (numpy.ndarray) –
- reco (numpy.ndarray) –
- relative_scaling_method (str) – see ctaplot.ana.relative_scaling
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ctaplot.ana.
relative_scaling
(simu, reco, method='s0')¶ Define the relative scaling for the relative error calculation. There are different ways to calculate this scaling factor. The easiest and most spread one is simply np.abs(simu). However this is possible only when simu != 0. Possible methods:
- None or ‘s0’: scale = 1
- ‘s1’: scale = np.abs(simu)
- ‘s2’: scale = np.abs(reco)
- ‘s3’: scale = (np.abs(simu) + np.abs(reco))/2.
- ‘s4’: scale = np.max([np.abs(reco), np.abs(simu)], axis=0)
This method is not exposed but kept for tests and future reference. The s1 method is used in all ctaplot functions.
Parameters: - simu (numpy.ndarray) –
- reco (numpy.ndarray) –
Returns: Return type: numpy.ndarray
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ctaplot.ana.
angular_resolution
(reco_alt, reco_az, simu_alt, simu_az, percentile=68.27, confidence_level=0.95, bias_correction=False)¶ Compute the angular resolution as the Qth (standard being 68) containment radius of theta2 with lower and upper limits on this value corresponding to the confidence value required (1.645 for 95% confidence)
Parameters: - reco_alt (numpy.ndarray - reconstructed altitude angle in radians) –
- reco_az (numpy.ndarray - reconstructed azimuth angle in radians) –
- simu_alt (numpy.ndarray - true altitude angle in radians) –
- simu_az (numpy.ndarray - true azimuth angle in radians) –
- percentile (float - percentile, 68 corresponds to one sigma) –
- confidence_level (float) –
Returns: Return type: numpy.array [angular_resolution, lower limit, upper limit]
-
ctaplot.ana.
angular_separation_altaz
(alt1, az1, alt2, az2, unit='rad')¶ Compute the angular separation in radians or degrees between two pointing direction given with alt-az
Parameters: - alt1 (1d numpy.ndarray, altitude of the first pointing direction) –
- az1 (1d numpy.ndarray azimuth of the first pointing direction) –
- alt2 (1d numpy.ndarray, altitude of the second pointing direction) –
- az2 (1d numpy.ndarray, azimuth of the second pointing direction) –
- unit ('deg' or 'rad') –
Returns: Return type: 1d numpy.ndarray or float, angular separation
-
ctaplot.ana.
angular_resolution_per_bin
(simu_alt, simu_az, reco_alt, reco_az, x, percentile=68.27, confidence_level=0.95, bias_correction=False, bins=10)¶ Compute the angular resolution per binning of x
Parameters: - simu_alt (numpy.ndarray) –
- simu_az (numpy.ndarray) –
- reco_alt (numpy.ndarray) –
- reco_az (numpy.ndarray) –
- x (numpy.ndarray) –
- percentile (float) – 0 < percentile < 100
- confidence_level (float) – 0 < confidence_level < 1
- bias_correction (bool) –
- bins (int or numpy.ndarray) –
Returns: bins: 1D numpy.ndarray ang_res: 2D numpy.ndarray
Return type: bins, ang_res
-
ctaplot.ana.
angular_resolution_per_energy
(reco_alt, reco_az, simu_alt, simu_az, energy, percentile=68.27, confidence_level=0.95, bias_correction=False)¶ Plot the angular resolution as a function of the event simulated energy
Parameters: - reco_alt (numpy.ndarray) –
- reco_az (numpy.ndarray) –
- simu_alt (numpy.ndarray) –
- simu_az (numpy.ndarray) –
- energy (numpy.ndarray) –
- **kwargs (args for angular_resolution) –
Returns: (E, RES)
Return type: (1d numpy array, 1d numpy array) = Energies, Resolution
-
ctaplot.ana.
angular_resolution_per_off_pointing_angle
(simu_alt, simu_az, reco_alt, reco_az, alt_pointing, az_pointing, bins=10)¶ Compute the angular resolution as a function of separation angle for the pointing direction
Parameters: - simu_alt (numpy.ndarray) –
- simu_az (numpy.ndarray) –
- reco_alt (numpy.ndarray) –
- reco_az (numpy.ndarray) –
- alt_pointing (numpy.ndarray) –
- az_pointing (numpy.ndarray) –
- bins (float or numpy.ndarray) –
Returns: bins: 1D numpy.ndarray res: 2D numpy.ndarray - resolutions with confidence intervals (output from ctaplot.ana.resolution)
Return type: (bins, res)
-
ctaplot.ana.
energy_resolution
(true_energy, reco_energy, percentile=68.27, confidence_level=0.95, bias_correction=False)¶ Compute the energy resolution of reco_energy as the percentile (68 as standard) containment radius of `true_energy-reco_energy)/simu_energy with the lower and upper confidence limits defined by the given confidence level
Parameters: - true_energy (1d numpy array of simulated energies) –
- reco_energy (1d numpy array of reconstructed energies) –
- percentile (float) – <= 100
Returns: Return type: numpy.array - [energy_resolution, lower_confidence_limit, upper_confidence_limit]
-
ctaplot.ana.
energy_bias
(simu_energy, reco_energy)¶ Compute the energy relative bias per energy bin.
Parameters: - simu_energy (1d numpy array of simulated energies) –
- reco_energy (1d numpy array of reconstructed energies) –
Returns: (energy_bins, bias)
Return type: tuple of 1d numpy arrays - energy, energy bias
-
ctaplot.ana.
energy_resolution_per_energy
(simu_energy, reco_energy, percentile=68.27, confidence_level=0.95, bias_correction=False)¶ Parameters: - simu_energy (1d numpy array of simulated energies) –
- reco_energy (1d numpy array of reconstructed energies) –
Returns: (e, e_res)
Return type: tuple of 1d numpy arrays - energy, resolution in energy
-
ctaplot.ana.
bias_per_energy
(simu, reco, energy, relative_scaling_method=None)¶ Bias between simu and reco per bins of energy
Parameters: - simu (numpy.ndarray) –
- reco (numpy.ndarray) –
- energy (: numpy.ndarray) –
- relative_scaling_method (str) – see ctaplot.ana.relative_scaling
Returns: bins, bias
Return type: numpy.ndarray, numpy.ndarray
-
ctaplot.ana.
resolution_per_bin
(x, y_true, y_reco, percentile=68.27, confidence_level=0.95, bias_correction=False, relative_scaling_method=None, bins=10)¶ Resolution of y as a function of binned x.
Parameters: - x (numpy.ndarray) –
- y_true (numpy.ndarray) –
- y_reco (numpy.ndarray) –
- percentile (float) –
- confidence_level (float) –
- bias_correction (bool) –
- relative_scaling_method (see ctaplot.ana.relative_scaling) –
- bins (int or numpy.ndarray (see numpy.histogram)) –
Returns: (x_bins, res) – x_bins: bins for x res: resolutions with confidence level intervals for each bin
Return type: (numpy.ndarray, numpy.ndarray)
-
ctaplot.ana.
resolution
(simu, reco, percentile=68.27, confidence_level=0.95, bias_correction=False, relative_scaling_method='s1')¶ Compute the resolution of reco as the Qth (68.27 as standard = 1 sigma) containment radius of (simu-reco)/relative_scaling with the lower and upper confidence limits defined the values inside
the error_percentileParameters: - simu (numpy.ndarray (1d)) – simulated quantity
- reco (numpy.ndarray (1d)) – reconstructed quantity
- percentile (float) – percentile for the resolution containment radius
- error_percentile (float) – percentile for the confidence limits
- bias_correction (bool) – if True, the resolution is corrected with the bias computed on simu and reco
- relative_scaling (str) – see ctaplot.ana.relative_scaling
Returns: Return type: numpy.ndarray - [resolution, lower_confidence_limit, upper_confidence_limit]
-
ctaplot.ana.
resolution_per_energy
(simu, reco, simu_energy, percentile=68.27, confidence_level=0.95, bias_correction=False)¶ Parameters: - simu (1d numpy.ndarray of simulated energies) –
- reco (1d numpy.ndarray of reconstructed energies) –
Returns: energy_bins - 1D numpy.ndarray resolution: - 3D numpy.ndarray see ctaplot.ana.resolution
Return type: (energy_bins, resolution)
-
ctaplot.ana.
impact_resolution_per_energy
(reco_x, reco_y, simu_x, simu_y, energy, percentile=68.27, confidence_level=0.95, bias_correction=False, relative_scaling_method=None)¶ Plot the angular resolution as a function of the event simulated energy
Parameters: - reco_x (numpy.ndarray) –
- reco_y (numpy.ndarray) –
- simu_x (numpy.ndarray) –
- simu_y (numpy.ndarray) –
- energy (numpy.ndarray) –
- percentile (float) – see ctaplot.ana.resolution
- confidence_level (float) – see ctaplot.ana.resolution
- bias_correction (bool) – see ctaplot.ana.resolution
- relative_scaling_method (str) – see ctaplot.ana.relative_scaling
Returns: (energy, resolution)
Return type: (1d numpy array, 1d numpy array)
-
ctaplot.ana.
impact_parameter_error
(reco_x, reco_y, simu_x, simu_y)¶ compute the error distance between simulated and reconstructed impact parameters :param reco_x: :type reco_x: 1d numpy array :param reco_y: :type reco_y: 1d numpy array :param simu_x: :type simu_x: 1d numpy array :param simu_y: :type simu_y: 1d numpy array
Returns: 1d numpy array Return type: distances
-
ctaplot.ana.
impact_resolution
(reco_x, reco_y, simu_x, simu_y, percentile=68.27, confidence_level=0.95, bias_correction=False, relative_scaling_method=None)¶ Compute the shower impact parameter resolution as the Qth (68 as standard) containment radius of the square distance to the simulated one with the lower and upper limits corresponding to the required confidence level
Parameters: - reco_x (numpy.ndarray) –
- reco_y (numpy.ndarray) –
- simu_x (numpy.ndarray) –
- simu_y (numpy.ndarray) –
- percentile (float) – see ctaplot.ana.resolution
- confidence_level (float) – see ctaplot.ana.resolution
- bias_correction (bool) – see ctaplot.ana.resolution
- relative_scaling_method (str) – see ctaplot.ana.relative_scaling
Returns: (impact_resolution, lower_confidence_level, upper_confidence_level)
Return type: (numpy.array, numpy.array, numpy.array)
-
ctaplot.ana.
distance2d_resolution
(reco_x, reco_y, simu_x, simu_y, percentile=68.27, confidence_level=0.95, bias_correction=False, relative_scaling_method=None)¶ Compute the 2D distance resolution as the Qth (standard being 68) containment radius of the relative distance with lower and upper limits on this value corresponding to the confidence value required (1.645 for 95% confidence)
Parameters: - reco_x (numpy.ndarray - reconstructed x position) –
- reco_y (numpy.ndarray - reconstructed y position) –
- simu_x (numpy.ndarray - true x position) –
- simu_y (numpy.ndarray - true y position) –
- percentile (float - percentile, 68.27 corresponds to one sigma) –
- confidence_level (float) –
- bias_correction (bool) –
- relative_scaling_method (str) –
- see ctaplot.ana.relative_scaling
Returns: Return type: numpy.array [angular_resolution, lower limit, upper limit]
-
ctaplot.ana.
distance2d_resolution_per_bin
(x, reco_x, reco_y, simu_x, simu_y, bins=10, percentile=68.27, confidence_level=0.95, bias_correction=False, relative_scaling_method=None)¶ Compute the 2D distance per bin of x
Parameters: - x (numpy.ndarray) –
- reco_x (numpy.ndarray) –
- reco_y (numpy.ndarray) –
- simu_x (numpy.ndarray) –
- simu_y (numpy.ndarray) –
- bins (bins args of np.histogram) –
- percentile (float - percentile, 68.27 corresponds to one sigma) –
- confidence_level (float) –
- bias_correction (bool) –
- relative_scaling_method (str) – see ctaplot.ana.relative_scaling
Returns: Return type: x_bins, distance_res
-
ctaplot.ana.
power_law_integrated_distribution
(xmin, xmax, total_number_events, spectral_index, bins)¶ For each bin, return the expected number of events for a power-law distribution. bins: numpy.ndarray, e.g. np.logspace(np.log10(emin), np.logspace(xmax))
Parameters: - xmin (float, min of the simulated power-law) –
- xmax (float, max of the simulated power-law) –
- total_number_events (int) –
- spectral_index (float) –
- bins (numpy.ndarray) –
Returns: y
Return type: numpy.ndarray, len(y) = len(bins) - 1
-
ctaplot.ana.
effective_area
(simu_energy, reco_energy, simu_area)¶ Compute the effective area from a list of simulated energies and reconstructed energies :param simu_energy: :type simu_energy: 1d numpy array :param reco_energy: :type reco_energy: 1d numpy array :param simu_area: :type simu_area: float - area on which events are simulated
Returns: Return type: float = effective area
-
ctaplot.ana.
effective_area_per_energy
(simu_energy, reco_energy, simu_area)¶ Compute the effective area per energy bins from a list of simulated energies and reconstructed energies
Parameters: - simu_energy (1d numpy array) –
- reco_energy (1d numpy array) –
- simu_area (float - area on which events are simulated) –
Returns: (E, Seff)
Return type: (1d numpy array, 1d numpy array)
-
ctaplot.ana.
effective_area_per_energy_power_law
(emin, emax, total_number_events, spectral_index, reco_energy, simu_area)¶ Compute the effective area per energy bins from a list of simulated energies and reconstructed energies
Parameters: - emin (float) –
- emax (float) –
- total_number_events (int) –
- spectral_index (float) –
- reco_energy (1d numpy array) –
- simu_area (float - area on which events are simulated) –
Returns: (energy, effective_area)
Return type: (1d numpy array, 1d numpy array)
-
ctaplot.ana.
bias_per_bin
(simu, reco, x, relative_scaling_method=None, bins=10)¶ Bias between simu and reco per bin of x.
Parameters: - simu (numpy.ndarray) –
- reco (numpy.ndarray) –
- x (: numpy.ndarray) –
- relative_scaling_method (str) – see ctaplot.ana.relative_scaling
- bins (bins for numpy.histogram) –
Returns: bins, bias
Return type: numpy.ndarray, numpy.ndarray
-
ctaplot.ana.
percentile_confidence_interval
(x, percentile=68, confidence_level=0.95)¶ Return the confidence interval for the qth percentile of x for a given confidence level
REF: http://people.stat.sfu.ca/~cschwarz/Stat-650/Notes/PDF/ChapterPercentiles.pdf S. Chakraborti and J. Li, Confidence Interval Estimation of a Normal Percentile, doi:10.1198/000313007X244457
Parameters: - x (numpy.ndarray) –
- percentile (float) – 0 < percentile < 100
- confidence_level (float) – 0 < confidence level (by default 95%) < 1
-
ctaplot.ana.
logbin_mean
(x_bin)¶ Function that gives back the mean of each bin in logscale
Parameters: x_bin (numpy.ndarray) – Returns: Return type: numpy.ndarray
-
ctaplot.ana.
binned_statistic
(x, values, statistic='mean', bins=10, range=None)¶ Compute a binned statistic for one or more sets of data.
This is a generalization of a histogram function. A histogram divides the space into bins, and returns the count of the number of points in each bin. This function allows the computation of the sum, mean, median, or other statistic of the values (or set of values) within each bin.
Parameters: - x ((N,) array_like) – A sequence of values to be binned.
- values ((N,) array_like or list of (N,) array_like) – The data on which the statistic will be computed. This must be the same shape as x, or a set of sequences - each the same shape as x. If values is a set of sequences, the statistic will be computed on each independently.
- statistic (string or callable, optional) –
The statistic to compute (default is ‘mean’). The following statistics are available:
- ’mean’ : compute the mean of values for points within each bin. Empty bins will be represented by NaN.
- ’std’ : compute the standard deviation within each bin. This is implicitly calculated with ddof=0.
- ’median’ : compute the median of values for points within each bin. Empty bins will be represented by NaN.
- ’count’ : compute the count of points within each bin. This is identical to an unweighted histogram. values array is not referenced.
- ’sum’ : compute the sum of values for points within each bin. This is identical to a weighted histogram.
- ’min’ : compute the minimum of values for points within each bin. Empty bins will be represented by NaN.
- ’max’ : compute the maximum of values for point within each bin. Empty bins will be represented by NaN.
- function : a user-defined function which takes a 1D array of values, and outputs a single numerical statistic. This function will be called on the values in each bin. Empty bins will be represented by function([]), or NaN if this returns an error.
- bins (int or sequence of scalars, optional) – If bins is an int, it defines the number of equal-width bins in the
given range (10 by default). If bins is a sequence, it defines the
bin edges, including the rightmost edge, allowing for non-uniform bin
widths. Values in x that are smaller than lowest bin edge are
assigned to bin number 0, values beyond the highest bin are assigned to
bins[-1]
. If the bin edges are specified, the number of bins will be, (nx = len(bins)-1). - range ((float, float) or [(float, float)], optional) – The lower and upper range of the bins. If not provided, range
is simply
(x.min(), x.max())
. Values outside the range are ignored.
Returns: - statistic (array) – The values of the selected statistic in each bin.
- bin_edges (array of dtype float) – Return the bin edges
(length(statistic)+1)
. - binnumber (1-D ndarray of ints) – Indices of the bins (corresponding to bin_edges) in which each value of x belongs. Same length as values. A binnumber of i means the corresponding value is between (bin_edges[i-1], bin_edges[i]).
See also
numpy.digitize()
,numpy.histogram()
,binned_statistic_2d()
,binned_statistic_dd()
Notes
All but the last (righthand-most) bin is half-open. In other words, if bins is
[1, 2, 3, 4]
, then the first bin is[1, 2)
(including 1, but excluding 2) and the second[2, 3)
. The last bin, however, is[3, 4]
, which includes 4.New in version 0.11.0.
Examples
>>> from scipy import stats >>> import matplotlib.pyplot as plt
First some basic examples:
Create two evenly spaced bins in the range of the given sample, and sum the corresponding values in each of those bins:
>>> values = [1.0, 1.0, 2.0, 1.5, 3.0] >>> stats.binned_statistic([1, 1, 2, 5, 7], values, 'sum', bins=2) BinnedStatisticResult(statistic=array([4. , 4.5]), bin_edges=array([1., 4., 7.]), binnumber=array([1, 1, 1, 2, 2]))
Multiple arrays of values can also be passed. The statistic is calculated on each set independently:
>>> values = [[1.0, 1.0, 2.0, 1.5, 3.0], [2.0, 2.0, 4.0, 3.0, 6.0]] >>> stats.binned_statistic([1, 1, 2, 5, 7], values, 'sum', bins=2) BinnedStatisticResult(statistic=array([[4. , 4.5], [8. , 9. ]]), bin_edges=array([1., 4., 7.]), binnumber=array([1, 1, 1, 2, 2]))
>>> stats.binned_statistic([1, 2, 1, 2, 4], np.arange(5), statistic='mean', ... bins=3) BinnedStatisticResult(statistic=array([1., 2., 4.]), bin_edges=array([1., 2., 3., 4.]), binnumber=array([1, 2, 1, 2, 3]))
As a second example, we now generate some random data of sailing boat speed as a function of wind speed, and then determine how fast our boat is for certain wind speeds:
>>> windspeed = 8 * np.random.rand(500) >>> boatspeed = .3 * windspeed**.5 + .2 * np.random.rand(500) >>> bin_means, bin_edges, binnumber = stats.binned_statistic(windspeed, ... boatspeed, statistic='median', bins=[1,2,3,4,5,6,7]) >>> plt.figure() >>> plt.plot(windspeed, boatspeed, 'b.', label='raw data') >>> plt.hlines(bin_means, bin_edges[:-1], bin_edges[1:], colors='g', lw=5, ... label='binned statistic of data') >>> plt.legend()
Now we can use
binnumber
to select all datapoints with a windspeed below 1:>>> low_boatspeed = boatspeed[binnumber == 0]
As a final example, we will use
bin_edges
andbinnumber
to make a plot of a distribution that shows the mean and distribution around that mean per bin, on top of a regular histogram and the probability distribution function:>>> x = np.linspace(0, 5, num=500) >>> x_pdf = stats.maxwell.pdf(x) >>> samples = stats.maxwell.rvs(size=10000)
>>> bin_means, bin_edges, binnumber = stats.binned_statistic(x, x_pdf, ... statistic='mean', bins=25) >>> bin_width = (bin_edges[1] - bin_edges[0]) >>> bin_centers = bin_edges[1:] - bin_width/2
>>> plt.figure() >>> plt.hist(samples, bins=50, density=True, histtype='stepfilled', ... alpha=0.2, label='histogram of data') >>> plt.plot(x, x_pdf, 'r-', label='analytical pdf') >>> plt.hlines(bin_means, bin_edges[:-1], bin_edges[1:], colors='g', lw=2, ... label='binned statistic of data') >>> plt.plot((binnumber - 0.5) * bin_width, x_pdf, 'g.', alpha=0.5) >>> plt.legend(fontsize=10) >>> plt.show()